rs29030299 SNP Detail

Summary

• ID
  rs29030299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78420852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTGGGG AGCAGGGTGG
  CGGAAGGGTA CAGGGAGCTT TGGGGATAAC ATTTGAAATG TAAATGAAGA AAATATCTAA
  TTTAAACCCC CCCCAAAGGA ATTAAGGTCT AAAAAAATAT CTCTAAGTCT TTATTTATGT
  GGCTACTATG AATCCAAATA TTTTGCGATA TATGATAACT GATAAATAAA TGAAGCTTCC
  W
  GTCTCCAATA CTCTATGAGG AATAATTATA AAGCAGAATG TTAAACACTT AGAATCCTTT
  AAAGCCTTAA TAGATATGTA TCATTTCTGC TCTTACAGAC CATGGGTAAA AACAACTTTC
  TTTCCTGGAT ATAACTATTA CACCTGTAAT TTCCTCTTCT TTTAATCTTT ATGCACATGG
  GAAACATTTC CCCATCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38357063	NES09698862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29030299					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38357063	NES09698862	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78420852 () rs orientation: forward

Symbol	Name	Function Class
Cfap47	cilia and flagella associated protein 47	within coordinates