rs29031087 SNP Detail

Summary

• ID
  rs29031087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:77491441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACAAGC CATTAGGGAG
  CAGGAAAAGG AGCCAGAAGA AGTTAAAATG TTTAATTTTA TAAGTTGGCT TCTGTAGTTA
  TAAAAGCTGC ATGTTTCTGC AGTTATATTG TATAAAGAAC ATCTTGTAAA ATACTTGTCA
  TCTTGCTTTG ACACATGTAC GGTAGTTTCT ATGATATGTG TTCGCTTTAC TACTCTCAAA
  R
  AGGCTAGCAG GCAGCAGGAT CTGGACTTGG AGCCCCCTCT CTACCTACCT GTGGGTGCCT
  GCTACTCCAG GGCCCACTCT GCAGACCTAG GGCTCCTTCT GAGGGTTCAG TGGAGTGGAC
  GGTTGCCACG GCACTCCGGC CGAGTCAGCC TGTCAGGCAG GGATGCCTAA AAGCTGCTCA
  TGAGGCAAAA AGAGTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38357919	NES09687286	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29031087					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38357919	NES09687286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:77491441 () rs orientation: forward

Symbol	Name	Function Class
Prrg1	proline rich Gla (G-carboxyglutamic acid) 1	1778 bp downstream
Tssr161376	transcription start site region 161376	1198 bp downstream