rs29031089 SNP Detail

Summary

• ID
  rs29031089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:77491300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCCTT CCCTGCCATC
  ATGCTTCATA AAAAAAAGAA GTCAACTAAG GCACTTCCCA TAGAGACTGG AGTCCTGCTT
  TCAATGACCT GGCTTTAATG GCTCTGTCCA GAGGGGTGTT GGAGCCCAGT CCACCCACAA
  ACCAGACAAG CCATTAGGGA GCAGGAAAAG GAGCCAGAAG AAGTTAAAAT GTTTAATTTT
  R
  TAAGTTGGCT TCTGTAGTTA TAAAAGCTGC ATGTTTCTGC AGTTATATTG TATAAAGAAC
  ATCTTGTAAA ATACTTGTCA TCTTGCTTTG ACACATGTAC GGTAGTTTCT ATGATATGTG
  TTCGCTTTAC TACTCTCAAA AAGGCTAGCA GGCAGCAGGA TCTGGACTTG GAGCCCCCTC
  TCTACCTACC TGTGGGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38357921	NES09687284	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29031089					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38357921	NES09687284	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:77491300 () rs orientation: forward

Symbol	Name	Function Class
Prrg1	proline rich Gla (G-carboxyglutamic acid) 1	1919 bp downstream
Tssr161376	transcription start site region 161376	1057 bp downstream