rs29031582 SNP Detail

Summary

• ID
  rs29031582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:78670821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTGAGC TATATTTTCT
  ACATTTTGAT AGCTACCAGT TCAATTCCCT GACAGAATCA GTTCTCATGT CCTCAGACAA
  CTGTGGGTTT ACAGGTATAC CCCTGTATAA GAAAACTATT TGCCAAAACC AATAGAGGAT
  ACCATCTCTT GGAGACCTAC ACACTTTGAA GAGTAGATCC CTCAGTTTCT TTCAGAATCC
  Y
  GCCTTTGATT TTTGGCGGTG TAGGACATTT TATGCTACTT GATGTAACTT GAGTCTATGA
  CAACAAAACT TTCCCCTTAA AACTGGTTAG GAAGAGGATG AAACCTAACA TACACTGGAC
  TGACAATATT ATTACAGTTT TCTTTGAACT CTTCTGTCCT ACTATGGGTA ATAGCCTTAG
  TCTTATCTGT GTTTCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38356834	NES09694604	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29031582					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38356834	NES09694604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78670821 () rs orientation: forward

Symbol	Name	Function Class
Mageb16	MAGE family member B16	Intron