rs29032316 SNP Detail

Summary

• ID
  rs29032316
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78666588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGAGT TCCTGGACAG
  CCAGAGCTAC ACAGAGAAAC CCTGTCTCGA AAAACAAAAA CAAAAAAAAT TAGGTCTAAG
  TAAACAAAAT CACAAAGTAA CAGGTAGAGA GTTTTACATT CAAGTTTTGG ATGTTAGCTG
  TGGGGTGAAG CATATACAGC TCTGACTAGA TCATAATTCT TTCTTTTAAA ATTAACATAC
  W
  GAGGATATTC ACAGCAACAT TATTGTCCTT CAGGACATTT ACACTTAACA GGATCATAAA
  AATTGACTTA CCTGTAAACA GTATGTTTTA TTTGTCTTTA GCCTACTAGA AGATATACTA
  CCATAATCAA TACATTTATA AGAGAACAGA CTACAGGTTG TTTAATCTAG AACCCTGGGT
  AAAATAAAAT AATTATTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38356848	NES09694669	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29032316					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38356848	NES09694669	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78666588 () rs orientation: forward

Symbol	Name	Function Class
Mageb16	MAGE family member B16	249 bp downstream