rs29033946 SNP Detail

Summary

• ID
  rs29033946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:76680377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCTCGG GGGAGAAATT
  TTAAGAAAGT CTTACTGCTT GGCTTGTGCA TATCCTTCAC TACTGTGAAG TGGACTTCCA
  CAGCAGATGT CTGCTCTTAA CCACATAAAC ATGTCCAAGA ATATTTACTT CTGGGTCTGC
  CTTCTGCATT CCTTTTGTGT AACATTACCT TCTGTCATGG CTGTGCACAC GGGGTCTAGC
  R
  GAAAACCTTA GGAGGGCACA TTTTAATCAA TCCAGTAAGG CAGCCAGGCA CAATACATCC
  CTCTTTGGCA TGCCTTTTGC TGAAAATAAT CTCATTTGAA AACCAGAGTT CTTTTTCTAA
  CAGAAAACTC TCTTTTCTCA ACCCTGTATT TAAGTCTTTG CCAGATTTTA ATTATATTTT
  AATAAATGTA ATCCAGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38358978	NES09699411	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29033946					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38358978	NES09699411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:76680377 () rs orientation: forward

Symbol	Name	Function Class
Gm52447	predicted gene, 52447	within coordinates
Rr4744	regulatory region 4744	1224 bp proximal
Rr6142	regulatory region 6142	within coordinates
Rr6143	regulatory region 6143	824 bp proximal
Tbl1x	transducin (beta)-like 1 X-linked	within coordinates