rs29034676 SNP Detail

Summary

• ID
  rs29034676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74958819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAGTAA GAGATCAAAC
  ATTTGGGAAG TCAGTTCTCT CCTTTCAGCT TTATGTGCGA TCCAAATATC AAACTCATGT
  CCTCGGGGTG GCCACATCCG GCTTCGTGGC TGAAGTACAG TAGGTGTCCC TTAAAGGACG
  CTGTCGAGAT CTTACCATGA TCTGAATGGT CTATCTGCAC TCCCATTCCT GAAGGACCCA
  Y
  ACAATGCTTT CTAAAACTAG CAAGTCTGGA GATCATTGCT ACTCTGCGTC GAGGAGTCCA
  TGCTTCAGTC GCCTCTGCCA GCTCCATTGC AACCAAGAAG ACAGTGCAAG GCCCACCATC
  CTCTGAGTAC ATTTTTGAAT GGGAATCTAA ATATGGTGCA TACAATTACC ATCCTTTTCC
  TGAGCCCCGT AGAGAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38361408	NES09692538	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29034676					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361408	NES09692538	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74958819 () rs orientation: forward

Symbol	Name	Function Class
Gm14715	predicted gene 14715	918 bp downstream
Oat-rs1	ornithine aminotransferase related sequence 1	3 bp upstream
Tssr161359	transcription start site region 161359	101 bp downstream