rs29034986 SNP Detail

Summary

• ID
  rs29034986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74919715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTCCCT AAGTGGGTCT
  CCTCTGGTGG GTGTCCTTTC CCCAGAAACA ATTGGGGGAC ACCTTTTCTG TTGCCCACGG
  TTCTGCCCCT GTGCCATCAT CTACACTGGG TTCCTCTCTG TTTGTTTTTC GATCCATGGG
  CTCATCCTAG CTCCAAAATG AGCTTGGAGG GCCAAAAGTC TAAGTGTCCC TCTGAACCCT
  R
  GCTAGATTGT TTTATATGAG AACCATAGAA CCCCCCCCCC CCAGTACTTC CTGCTTGGCA
  GCGTTCCAAC CCTAAGCACA TTGTTGTTGT TGACCAGGAA GAGTCTGTTG GGAAGTTTGG
  TAAAAATTTA AAGTTGGTTC AGGTAAGTTC CATGTTACAT ATGCCAGGGA AGAATTCGAC
  AGTATGAGGA GCTTAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38361489	NES09693782	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29034986					SNP	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361489	NES09693782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74919715 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	927 bp upstream
Rr692140	regulatory region 692140	1546 bp distal
Rr692141	regulatory region 692141	1045 bp distal
Rr692142	regulatory region 692142	467 bp distal
Tssr163681	transcription start site region 163681	1576 bp upstream
Tssr163682	transcription start site region 163682	1519 bp upstream
Tssr163683	transcription start site region 163683	958 bp upstream