rs29034989 SNP Detail

Summary

• ID
  rs29034989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:74917740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGGGCT AGTCGGCGTC
  CTCAGGCCTC TCATTAGGTC GCTAAAGTAA GCAGGCGGAG AAAAGTAAAC ACAGGCAAGT
  GCAGCTGAGT CTGGGAATGG GGCTTCAGCC ACCATCTCGG CTCAGCCTCC CAGGGGTCCC
  AGAGCGGTCC CGGGTGCTGC AGCCCTGCTC GCTAGCTCTG AGTTGCACAA CCAGAGCCAT
  Y
  GGGACTCAAG CTGACCGCCA GGGCGCTGCT AGGGGAGAGA ACCAAAAGGT ACCTCCGGGC
  TAGCCTGGAA AGCTTCTGCC ACCGAAAGGA AAAACAAAAC AAAACAACAA CAACAACAAC
  ACACACACAA AACACCAAAA ACAAAAACAA AAAAAAAAAC AAAAAACAAA ACAAACAAAC
  AAAAAAACCA AAAAACTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss38361492	NES09693883	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs29034989					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361492	NES09693883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74917740 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pls3	plastin 3 (T-isoform)			Intron
				Noncoding-Transcript-Variant
Rr692140	regulatory region 692140			within coordinates
Rr692141	regulatory region 692141			430 bp proximal
Rr692142	regulatory region 692142			1038 bp proximal
Tssr163681	transcription start site region 163681			388 bp downstream
Tssr163682	transcription start site region 163682			402 bp downstream
Tssr163683	transcription start site region 163683			967 bp downstream