rs29034993 SNP Detail

Summary

• ID
  rs29034993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74917280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGAGAC TTAAGATGCG
  GGATGCCAAT TGGCAAGTGT GGGACCTCGG CCATTAAGTT GCAATTCACA GTAAACTGCA
  TCTCAGTGTT CAACTTTAGT CTCCCAAACC CATTGTGATG TTGAAATGGA GTAAATGCTT
  ACTGTTCCGT AGGTTTTTAA ACCTACACTT CTACCTACCG TATTCACTCA AGCTCCTTCA
  Y
  CCTGTCTGCA TTACCCCTGA GTAGAAGGGT GATAGCAGCA TCCCTCTGGT CTGATCCTAT
  ATGACTAGAC GCCCCAGTTT AAATCCAAGC TAGACCTGCA CCACTGGTGT AGTCAGTTAT
  ACAGCTCCAG TGAAAAGCCA GTCTTCAGGA TGTAAACTGT CAGCAAAGCT GGAGCAAGCA
  AGGGCCTGGA GCCAGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss38361496	NES09693879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29034993					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361496	NES09693879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74917280 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	within coordinates
Rr692140	regulatory region 692140	8 bp proximal
Rr692141	regulatory region 692141	890 bp proximal
Rr692142	regulatory region 692142	1498 bp proximal
Tssr163681	transcription start site region 163681	848 bp downstream
Tssr163682	transcription start site region 163682	862 bp downstream
Tssr163683	transcription start site region 163683	1427 bp downstream