rs29035103 SNP Detail

Summary

• ID
  rs29035103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74156158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATACTCC TTCCCATCTT
  CCTCACTCTT CTTTGGTGGC CGTGTTGTAT CTGTGTATAA GAACTCAAAT CCTTGATGAG
  CTCTTCTTGG TCCTTGCTAT CTTTTAGTGT ACTGACTCAA AATGTCTATA TGGAAACTCT
  ACCCATCTTT GGGGCAGATA ATATAATAGA GATGTTTTTC TCATGAACTG AAGGATTGGT
  R
  CTGGAAGGTA GTACAGATAC AATACCCCCA CCTACCCATC TCTCCAGCAC TGTTTTGTTT
  TTATGACATG GAAAGAACAC AATGGTTTTG TTTAAACATT TTGTTAAAAA GTTAAAATGT
  TGGGGCTGGC AATTTTTCAG CATTTGCCAC AGAAGGCTCA TAACCTGAGA ACCTGAAACC
  ATGTGGTGGA AGGAAAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38362616	NES09704294	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29035103					SNP	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38362616	NES09704294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74156158 () rs orientation: forward

Symbol	Name	Function Class
Mpp1	membrane protein, palmitoylated	within coordinates
Tssr163652	transcription start site region 163652	1914 bp upstream
Tssr163653	transcription start site region 163653	541 bp upstream
Tssr163654	transcription start site region 163654	1090 bp downstream