rs29035154 SNP Detail

Summary

• ID
  rs29035154
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74917026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTTGTT TTGAAAGCAG
  CTTTTTTCTT ATTTTATTAT TCTTTTTAAT TTTTAATTTT GCTTAAAACC ACAGCAACAG
  ATCACTTTCT GCTCCCCTCA TGCAAATCTA GTTCAGTGGA TGCTAACTGA CACACATCGC
  CCCTCCCACC AACTCCCTCC ACACTTTTGT CTTGGTAGTT TGGGGAACAT GGGCCTCAGC
  M
  ATTGCATTCC AGTTTTAAAG TCAAAAGAGG TCATGTGACT ATTACCCTAG GGGCATCAGA
  GACTTAAGAT GCGGGATGCC AATTGGCAAG TGTGGGACCT CGGCCATTAA GTTGCAATTC
  ACAGTAAACT GCATCTCAGT GTTCAACTTT AGTCTCCCAA ACCCATTGTG ATGTTGAAAT
  GGAGTAAATG CTTACTGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss38361497	NES09693878	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs29035154					SNP	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361497	NES09693878	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74917026 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	within coordinates
Rr692140	regulatory region 692140	262 bp proximal
Rr692141	regulatory region 692141	1144 bp proximal
Rr692142	regulatory region 692142	1752 bp proximal
Tssr163681	transcription start site region 163681	1102 bp downstream
Tssr163682	transcription start site region 163682	1116 bp downstream
Tssr163683	transcription start site region 163683	1681 bp downstream