rs29035542 SNP Detail

Summary

• ID
  rs29035542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73781147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGACAAAC AAGGGAATAA AGGAGGAGGA AAAGATAAAA
  TCATGGAGAG AATACACTCA AAAAAGTACA CTGTATACTA TGAAAATGTC CTTAACGTAA
  M
  AAAGTACCAT GTGCAATGAA TACACATCAA TTAAAAAAAA AATTCGAGAA AGGAGGAAAA
  ATTCAAGATA GAAAGTGAGA AGAGATCTCA AAATATAAAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38363014	NES09690364	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	A	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29035542					SNP	C	C	C	C	A	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363014	NES09690364	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73781147 () rs orientation: forward

Symbol	Name	Function Class
DXMit146b	DNA segment, Chr X, Massachusetts Institute of Technology 146b	815 bp distal
Gm61786	predicted gene, 61786	624 bp downstream