rs29035843 SNP Detail

Summary

• ID
  rs29035843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73333929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAAAACA TTTGTGTTGT
  GCCACCATAC CTCTGTCTTC TGTGTAGGAA TGCAGATGGG AAGCACCTTG CTGAACAAGA
  AACAGGACCA TGTGCCTGGA TACAGTGAAA TTATTTTAGT AGTTGGACAT TGGAATCTCA
  CTGTGCACTG GCCACTCAAG TCTTTTGCTA TCACCTGTAA GCCAAATGGC AATGTGGTGG
  R
  ATTCATAAAG GTGATAAAAC AAAGCTGGGC GGTGGTGGCA CACACCTTTG ATCCCAGCAC
  TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCCATGCCA GCCTGGTCTA CAAAAGTGAG
  TTCCAGGACA GCCAGGACTA TAAAGAGAAA CCCTGTCTCG AACCCCCCCC CCCAAAAAAA
  AGGTGATAAA ACAAGAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38363526	NES09697858	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29035843					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363526	NES09697858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73333929 () rs orientation: forward

Symbol	Name	Function Class
B230340J04Rik	RIKEN cDNA B230340J04 gene	700 bp upstream
Tafazzin	tafazzin, phospholipid-lysophospholipid transacylase	172 bp downstream