rs29035883 SNP Detail

Summary

• ID
  rs29035883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74005129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTCCAAT TACCAAGTAA AACTTGAGAG AAAGATGCCT
  ACATTTGTGT CAGGTTCTGT CCAATCAATA GCAGGTCTAG GTTTAGGGCA TGTCTGTGTG
  Y
  CTGTGTATGT ATGTTGGTCT TAGGGGTGTT TCTGGAGGGC AACAAGGAGT CACTTCTGGG
  TAAGGTACAT CTCGGGCAAC AGGAGAGCAC AGAAGGATGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38362997	NES09690131	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
ss38363236	NES09693592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29035883					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38362766	NES09688523	PERLEGEN	MM_PANEL	f	SNP	C/T
ss38362997	NES09690131	PERLEGEN	MM_PANEL	f	SNP	C/T
ss38363236	NES09693592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74005129 () rs orientation: forward

Symbol	Name	Function Class
Gm15363	predicted gene 15363	1876 bp downstream
Gm62199	predicted gene, 62199	1699 bp downstream
Rr692061	regulatory region 692061	1556 bp proximal