rs29036028 SNP Detail

Summary

• ID
  rs29036028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74004587 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        TCCTTCACAT GGCATCAGGC AGCTGCTGCT GGTGAGTTGC
  AGGTTCTATA TCTAGCTAAG TGACTGATTA GGTACCATTC TGTTATTTGT TCCCTGTCAC
  R
  TGTTTAAATG ATACTAATCT GGCATCACAT TCCATTGTTT GGATACCCCT AAGTTAAGAG
  TATCCGGTTT GAAAAAGAAG GCAGTATGAG AGGGAGGGAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38362771	NES09688511	PERLEGEN	MM_PANEL2	r	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
ss38363230	NES09693603	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29036028					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38362771	NES09688511	PERLEGEN	MM_PANEL	r	SNP	C/T
ss38363230	NES09693603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74004587 () rs orientation: reverse

Symbol	Name	Function Class
Gm15363	predicted gene 15363	1334 bp downstream
Gm62199	predicted gene, 62199	1157 bp downstream
Rr692060	regulatory region 692060	1587 bp distal