rs29036057 SNP Detail

Summary

• ID
  rs29036057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74960159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAACAA AGATTGTGAT
  ACTTGGATGG TTGTGCCTGC AACTCTGAGA TAATGGGCTT CTGGCCAAGC CAACTCACTG
  CGATATCATC AGGTTTGCCT CTCCACTTGT GATCAAGGAA GATGAGATCC AGGAGTCAGT
  GGAGATCATC AACAAGGCCG TCTTGTTCTT CTGAGAGTAG GAACTCTGGG GAGCCATCAT
  Y
  AGACAGGGTT CTTGTGAAAC TCTGCTTGCA ATGGGCAGAT TCTGTCTCCT GAAAGATGTT
  TTTTGAATAT ATATTATGTA TTTCAGTTGA TGCATGATAA AGTGACAGAA GGGTGAGAGC
  GAGAGGCATC TCTTTGTTAA GGTTTGACTG TGAGGCAACT TTCTAAGGAG AAACAGATCA
  TTTGTATACA GCCTGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38361390	NES09692560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29036057					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361390	NES09692560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74960159 () rs orientation: forward

Symbol	Name	Function Class
Gm14715	predicted gene 14715	within coordinates
Oat-rs1	ornithine aminotransferase related sequence 1	27 bp downstream
Tssr161359	transcription start site region 161359	1441 bp downstream