rs29036130 SNP Detail

Summary

• ID
  rs29036130
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74004329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTCTC CTCTCTTCTC
  CCCTCCCCTC CCCTCCCCTC TTCTCTTATT TTCTTTTCTT TTCTTAACTG TTTTCAGCTT
  TATAAGATGA TATAGATGAT TCTGTAATGA AGCTTCCTCA TAAGATGGCT ACTAATTATT
  GCAGGTATTT TACAGTGACT GTTTAGCTCC ACTGGTCAGG ACAAACTGGA TGTTTTCCTT
  S
  TGTAAATGTT GGGAATCATC AGCCTGCAGC TTCCTATTAT ATTTGAGGAC TGGCTGCCTG
  CCTGTCTGCC TGCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTTC TTTCTTCCTT CTTTCCTCCC ACCTTCCATC CCTCCCTCTC ATACTGCCTT
  CTTTTTCAAA CCGGATACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38362773	NES09688538	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29036130					SNP	C	C	C	C	G	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38362773	NES09688538	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74004329 () rs orientation: forward

Symbol	Name	Function Class
Gm15363	predicted gene 15363	1076 bp downstream
Gm62199	predicted gene, 62199	899 bp downstream