rs29036367 SNP Detail

Summary

• ID
  rs29036367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74959349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTCTA TAACTATGTC
  CTTGGTGAAT ACAAGCAGTA CATCACCAAG CTTTTCAACT ACAACAAAGT TCTTCCTATG
  AATACAGGAG TGGAGGCTGG AGAGACTGAA TGTAAGCTTT CTTGTCCTTG GGCTACACAG
  TGAAAGGCAT CCAGAAATAC AAAGCAAAGA TTTTTTTTTT CTGTTGGAAA CGTTTGGGGT
  Y
  GAAAGTTGTG AGCAGTCTCC AGTTCTGCAG ATCCGTCCAG TTACAATGGC TTTGGATTCT
  TCCTGCCAGG CTTTGAAACC ATCCCGTTTA AGGATCTGCC TACACTGGAG CATGCTCTTC
  AGGATCCAAA TGTTGCTGCT TTCATGGTGG GGCCCATCCA GGGTGAAGCA GGTGTTATTG
  TTCTGGATCC AAGACACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38361400	NES09692549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29036367					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38361400	NES09692549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74959349 () rs orientation: forward

Symbol	Name	Function Class
Gm14715	predicted gene 14715	388 bp downstream
Oat-rs1	ornithine aminotransferase related sequence 1	within coordinates
Tssr161359	transcription start site region 161359	631 bp downstream