rs29037024 SNP Detail

Summary

• ID
  rs29037024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73374250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCACCT GAGGCCATGA
  GTTGGAGATG TAGTGGCACT GAAACCAGTC TCAGGCCTTA ATTCTCCAGA GCTTTGCTCT
  AGGACTCCTG CTAGCAGTGC CACTAACAGA GAAGCACCCC TGACCCCAAC TTGTGTTTGT
  TCTCTCCCTG CATTTCCTAG TGTGTAATGT TAGGGTCCCA GTTCTGGGAG AACCTTCCAT
  Y
  CCATCTTTTC TAGCAGCTGA CTCTGATGCC CCCTTGGGTG TGGCCCAGTT GAGACAAGGC
  CTCTTGGCTT CTTTCCAGTA CAGGAGTGGG AGATGATTGA TGGCCTGCAA GCTTGCCTGT
  GCTTGTCACT CATTCATTTG CCCTATTAGA GGCCCCTCCC CTCTTTCAGC CTCAGTCACC
  ATCTGGGGCT TTATCATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38363476	NES09696734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29037024					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363476	NES09696734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73374250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22797	CpG island 22797	1352 bp distal
Gm39520	predicted gene, 39520	1886 bp upstream
Plxna3	plexin A3	within coordinates
Rr692009	regulatory region 692009	1897 bp distal
Rr692010	regulatory region 692010	1568 bp distal
Rr692011	regulatory region 692011	491 bp distal
Tssr161342	transcription start site region 161342	1568 bp downstream