rs29037025 SNP Detail

Summary

• ID
  rs29037025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73374221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATAAGCA GCCAAGGCCC
  TCAAAGGGAG AAAGCACCTG AGGCCATGAG TTGGAGATGT AGTGGCACTG AAACCAGTCT
  CAGGCCTTAA TTCTCCAGAG CTTTGCTCTA GGACTCCTGC TAGCAGTGCC ACTAACAGAG
  AAGCACCCCT GACCCCAACT TGTGTTTGTT CTCTCCCTGC ATTTCCTAGT GTGTAATGTT
  M
  GGGTCCCAGT TCTGGGAGAA CCTTCCATTC CATCTTTTCT AGCAGCTGAC TCTGATGCCC
  CCTTGGGTGT GGCCCAGTTG AGACAAGGCC TCTTGGCTTC TTTCCAGTAC AGGAGTGGGA
  GATGATTGAT GGCCTGCAAG CTTGCCTGTG CTTGTCACTC ATTCATTTGC CCTATTAGAG
  GCCCCTCCCC TCTTTCAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38363477	NES09696733	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29037025					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363477	NES09696733	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73374221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22797	CpG island 22797			1323 bp distal
Gm39520	predicted gene, 39520			1857 bp upstream
Plxna3	plexin A3			Intron
				Noncoding-Transcript-Variant
Rr692009	regulatory region 692009			1868 bp distal
Rr692010	regulatory region 692010			1539 bp distal
Rr692011	regulatory region 692011			462 bp distal
Tssr161342	transcription start site region 161342			1539 bp downstream