rs29037270 SNP Detail

Summary

• ID
  rs29037270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACCAGG CTGGCCTTGA
  ACTCAGAAAT CCTCTGGCTC CCAAATGCTG GGATTAAAGG CGTTTGCCAC CACTGCCCGG
  CTTAATTTCA GAGTCTTATT CCAATAGGTG TGGCATTGAG CAGGTGAGAA CTTCAAACAG
  TAGGAACAAG AGAGGAGAAA CAACACTGAT GTGGTCTGTT TGGCTTTGTG CAGACAACAG
  R
  AGACCACACA TAGTCAAATA GAGAAGACCA GAAACGCCAG CAGGCTTGGA CAAGACCACC
  CCCAACCTGG CCCTCCATGC CCACCCTCTC TTGCACATTA CCTCTTATTC TTTCTAATAG
  AGAAGGTAAG ATCACAGCAA AAATTTTGGG CTCCCGAGGC CACCTCAATA CCACTACACT
  ACTATGATTG ACACAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38364312	NES09692743	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29037270					SNP	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364312	NES09692743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	447 bp proximal
Cpgi22782	CpG island 22782	1178 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1568 bp distal
Rr395204	regulatory region 395204	799 bp downstream
Tssr163577	transcription start site region 163577	1391 bp downstream
Tssr163578	transcription start site region 163578	1443 bp downstream
Tssr163579	transcription start site region 163579	1473 bp downstream
Tssr163580	transcription start site region 163580	1587 bp downstream
Tssr163581	transcription start site region 163581	1939 bp downstream
Tssr163582	transcription start site region 163582	1976 bp downstream