rs29037271 SNP Detail

Summary

• ID
  rs29037271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACACCA CTGTCCGGCT
  CTTTTTTTGT TTTGTTTTGC TTTTTGTTTT TCGAGACAGG ATTTTTCTGT AGTCCTAGCT
  GTCCTGTAAC TCACTCTCTA GACCAGGCTG GCCTTGAACT CAGAAATCCT CTGGCTCCCA
  AATGCTGGGA TTAAAGGCGT TTGCCACCAC TGCCCGGCTT AATTTCAGAG TCTTATTCCA
  M
  TAGGTGTGGC ATTGAGCAGG TGAGAACTTC AAACAGTAGG AACAAGAGAG GAGAAACAAC
  ACTGATGTGG TCTGTTTGGC TTTGTGCAGA CAACAGGAGA CCACACATAG TCAAATAGAG
  AAGACCAGAA ACGCCAGCAG GCTTGGACAA GACCACCCCC AACCTGGCCC TCCATGCCCA
  CCCTCTCTTG CACATTACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ
ss38364313	NES09692742	PERLEGEN	MM_PANEL2	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ
rs29037271					SNP	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364313	NES09692742	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	544 bp proximal
Cpgi22782	CpG island 22782	1275 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1471 bp distal
Rr395204	regulatory region 395204	702 bp downstream
Tssr163577	transcription start site region 163577	1488 bp downstream
Tssr163578	transcription start site region 163578	1540 bp downstream
Tssr163579	transcription start site region 163579	1570 bp downstream
Tssr163580	transcription start site region 163580	1684 bp downstream