rs29037272 SNP Detail

Summary

• ID
  rs29037272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACATCTG GTCTCTAATT
  GGGTCAAGGA GAACCAGGAA AATGAAAGTT TGTGTCCAAA CTTTAAAAAA GTAGCATCCC
  ATGGGAGCTG AACACAGGGA CTCTCTTACC TAGGGTCACC TCAGCCTTCC TGCCCATTGA
  AACCTCAATG GAGGCAGTCC TAGTTTTGAA ATCCAATGGG TTCTGCTGAA CCTATTTTGT
  Y
  GGTACCCAGA GCTAGGTAAT TTCAGATTGT TTGTTTGTTT TTGAGACAGG GTTTTTCTGT
  ATAGCCCTGG CTGTCCTGGA ACTCACACTG TAGGCCAGGC TGGCCTCGAA CTCAGAAATC
  CACCTGCCTC TGCCTCCCGG ATTAAGGGCG TGCAACACCA CTGTCCGGCT CTTTTTTTGT
  TTTGTTTTGC TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ
ss38364314	NES09692794	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	NZW/LacJ
rs29037272					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364314	NES09692794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	895 bp proximal
Cpgi22782	CpG island 22782	1626 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	80 bp proximal
Rr10008	regulatory region 10008	1120 bp distal
Rr395204	regulatory region 395204	351 bp downstream
Tssr163577	transcription start site region 163577	1839 bp downstream
Tssr163578	transcription start site region 163578	1891 bp downstream
Tssr163579	transcription start site region 163579	1921 bp downstream