rs29039139 SNP Detail

Summary

• ID
  rs29039139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTTCCC TGTGCTGGCT
  GCCTGCAACC TCCAAGCCAC TTCTGCTTCC TTGGTAAAAT TGTCTTGGAC ATTTTGGATT
  CTAGCTTTGG ATTCTAGTGA TTTGTGATGC TACTGGTCCA GCTTACTCCA ATCTTGCAGT
  CAACCACTCC TGCAGCCACC TGGGAGGAAT TAGACTCCTA CCATCTCTGG GAGCATAGGA
  Y
  AGAGCCTGCT TCCTAACCTC TCTTGCCTCT CTGAGCCCTT TGAAGGCTGG CGTCCAGCAG
  AGTTGGCTGG CTGGGCTGTC CAGTATTATG GGCATGACTC AGCCCAAGCA GAGGTTAACA
  AGCAGAGCTC AGCACAGTGG CTACAGCAGT AGTGTTGCTG CTCAGGGTCA AGGCTGTCAG
  AACCCCAGGC ACGTCGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38364546	NES09695311	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29039139					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364546	NES09695311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761942 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Cpgi22777	CpG island 22777	1718 bp distal
Cpgi22778	CpG island 22778	921 bp distal
Gm61833	predicted gene, 61833	497 bp upstream
Rr406105	regulatory region 406105	1635 bp downstream
Rr691931	regulatory region 691931	1586 bp distal
Rr691932	regulatory region 691932	113 bp proximal
Tssr161281	transcription start site region 161281	1718 bp downstream
Tssr161282	transcription start site region 161282	1586 bp downstream
Tssr161283	transcription start site region 161283	1557 bp downstream
Tssr161284	transcription start site region 161284	1537 bp downstream
Tssr161285	transcription start site region 161285	1272 bp downstream
Tssr163564	transcription start site region 163564	1870 bp upstream
Tssr163565	transcription start site region 163565	494 bp upstream
Tssr163566	transcription start site region 163566	472 bp upstream