rs29039142 SNP Detail

Summary

• ID
  rs29039142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGACT GGCCCCTGTC
  CTCGCGTCCC CTAGAGTCCC GCTCCACCTA CCTCCACAAC ATCCCTATGC CTGATCCTGC
  CCTAAACTCC GAAGTCGGCC CGGATCCCTA CACTTCCCAG AACCCACAGT ATTTCTGGGA
  TGCTCGCCTT CCTCCCTCAT GAAGGGACTG GGGGGGAACC TCGTTGGTCC GAAAGTCAGC
  M
  ATGCATGCGG ACCCAGCTTA CCGAGCTTCA GCCTACTCGC ACGCCCCACC GCAACTACCA
  AACTCTCACC AATGCTCAGG CCCGCCCCCT AGCCCGCGGG CGGAAACCGG AAACGCGCGT
  CAGGCCCCGC CTACAAGTCC TCTAGAGGCC CCTAACGGCT CCGCCCATTG TCGTTTCCCG
  CCCCGCCCTT AGGCGCGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38364551	NES09695306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29039142					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364551	NES09695306	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759702 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	501 bp upstream
Bcap31	B cell receptor associated protein 31	within coordinates
Cpgi22777	CpG island 22777	within coordinates
Cpgi22778	CpG island 22778	963 bp proximal
Gm61833	predicted gene, 61833	1516 bp downstream
Rr406105	regulatory region 406105	305 bp upstream
Rr691928	regulatory region 691928	within coordinates
Rr691929	regulatory region 691929	401 bp distal
Rr691930	regulatory region 691930	159 bp distal
Rr691931	regulatory region 691931	69 bp proximal
Tssr161281	transcription start site region 161281	481 bp upstream
Tssr161282	transcription start site region 161282	616 bp upstream
Tssr161283	transcription start site region 161283	657 bp upstream
Tssr161284	transcription start site region 161284	690 bp upstream
Tssr161285	transcription start site region 161285	843 bp upstream
Tssr163562	transcription start site region 163562	49 bp downstream
Tssr163563	transcription start site region 163563	102 bp downstream
Tssr163564	transcription start site region 163564	346 bp downstream
Tssr163565	transcription start site region 163565	1734 bp downstream
Tssr163566	transcription start site region 163566	1754 bp downstream