rs29039262 SNP Detail

Summary

• ID
  rs29039262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72534829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATGGGTT TAAAACTGTA GGAGTGGGGA GGTTGAGTCA
  CCACAGGCTG AGGTGTATGA GGGTGCTCAG AGTCCCTGCA TTTCTCCCAG TGTCTGTGTG
  Y
  GTCCATATGC ATGTATGTAC CCACCCCCTT TACACCAGCT GTGACAACAG ACTGGATGAG
  CCAGGCTTAT GCTGGTGATG ATGCTGGCCC CCAGGTCTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss38364965	NES09700617	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29039262					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364965	NES09700617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72534829 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	29 bp distal
Rr6090	regulatory region 6090	1972 bp proximal
Rr7746	regulatory region 7746	38 bp distal
Tssr161208	transcription start site region 161208	436 bp downstream
Tssr161209	transcription start site region 161209	413 bp downstream
Tssr161210	transcription start site region 161210	394 bp downstream
Tssr161211	transcription start site region 161211	348 bp downstream
Tssr161212	transcription start site region 161212	282 bp downstream
Tssr161213	transcription start site region 161213	228 bp downstream
Tssr161214	transcription start site region 161214	91 bp upstream
Tssr161215	transcription start site region 161215	742 bp upstream
Tssr161216	transcription start site region 161216	788 bp upstream
Tssr161217	transcription start site region 161217	820 bp upstream
Tssr161218	transcription start site region 161218	840 bp upstream
Tssr161219	transcription start site region 161219	898 bp upstream
Tssr161220	transcription start site region 161220	1503 bp upstream
Tssr161221	transcription start site region 161221	1517 bp upstream
Tssr161222	transcription start site region 161222	1581 bp upstream
Tssr161223	transcription start site region 161223	1747 bp upstream
Tssr161224	transcription start site region 161224	1787 bp upstream
Tssr161225	transcription start site region 161225	1971 bp upstream
Tssr163544	transcription start site region 163544	179 bp downstream
Tssr163545	transcription start site region 163545	827 bp downstream
Tssr163546	transcription start site region 163546	858 bp downstream