rs29040006 SNP Detail

Summary

• ID
  rs29040006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73045995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGAAAA AAAAACCTTT
  CTCAGTTTGT AAGACAGAAT GGGGAGATGG ATAATTATTG AGGACATTGA GAGTTGTATT
  GCTCTAAGAA GTACTTTGAA GGACTCAACA CAGAGCATGC TCCTCAACTA CAGAATAGGG
  ACTCATCAAA CACACAGGGC ACCTTGCAAA GCTGACCATA TGCTATGTCT TAAAACAAGT
  Y
  TCAATTAAAT TAATTGTGAC TACAATGGAA TCACATGAAA AACCAACAGC AAGAAGATAA
  TGGTATCCTT CTGTATTTAT AGTATTCTAT CAATGGATCC AATTAACCAA CATTTCTTTT
  GAAGCTTAAT GATAATTTTA TAATATAATT GTATTAGAGT TTAAAAGAAA TTTTTCAGGC
  TGGAGAGATG GCTCAGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38363988	NES09688463	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29040006					SNP	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363988	NES09688463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73045995 () rs orientation: forward

Symbol	Name	Function Class
Rr4620	regulatory region 4620	1006 bp proximal
Rr10016	regulatory region 10016	795 bp distal
Rr10766	regulatory region 10766	1245 bp proximal
Rr395209	regulatory region 395209	1152 bp downstream