rs29040007 SNP Detail

Summary

• ID
  rs29040007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73045966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAGA AAAAAGAAAA
  AAAAGAAAAA AAAGGAAAAA AAAACCTTTC TCAGTTTGTA AGACAGAATG GGGAGATGGA
  TAATTATTGA GGACATTGAG AGTTGTATTG CTCTAAGAAG TACTTTGAAG GACTCAACAC
  AGAGCATGCT CCTCAACTAC AGAATAGGGA CTCATCAAAC ACACAGGGCA CCTTGCAAAG
  S
  TGACCATATG CTATGTCTTA AAACAAGTTT CAATTAAATT AATTGTGACT ACAATGGAAT
  CACATGAAAA ACCAACAGCA AGAAGATAAT GGTATCCTTC TGTATTTATA GTATTCTATC
  AATGGATCCA ATTAACCAAC ATTTCTTTTG AAGCTTAATG ATAATTTTAT AATATAATTG
  TATTAGAGTT TAAAAGAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38363989	NES09688461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29040007					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363989	NES09688461	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73045966 () rs orientation: forward

Symbol	Name	Function Class
Rr4620	regulatory region 4620	1035 bp proximal
Rr10016	regulatory region 10016	766 bp distal
Rr10766	regulatory region 10766	1274 bp proximal
Rr395209	regulatory region 395209	1123 bp downstream