rs29040010 SNP Detail

Summary

• ID
  rs29040010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73043316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTTAAT TCTCTCTGAG
  AAAAACAACA GTGAGGGCAT ATTTCCAGTG TGACAGCTGC AGTCTTGACG ATATGATTTT
  TTAAAATGAA TAAAGGCGGT AGAAAGATGC AATCCTTCTC TTCTGGTTTC TAAGTGAGCA
  GAGTAGCTTC CCCTAACCCT GCCCCCATAG ATTAACAGTC CCTTTCACGT CCAGATTGTC
  Y
  TTATCTCTAC TTAATATGCA ATCTCTACTG ACTACAGCTT CATTCTAGAC CCTCCTGCTG
  ACAGTGTAAA ACAAGCTTTC TTTTACAAAG GTTTGCTCAA GACAGTTTTA GCAACTGGCG
  TTCTATAGAC CACAGCATGG CTCTCGTAGA TTTTTAGAAA AGAGAAGGAA TAATAATAAA
  TAATAATAAT AATAATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38363992	NES09688592	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29040010					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38363992	NES09688592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73043316 () rs orientation: forward

Symbol	Name	Function Class
Rr10016	regulatory region 10016	1085 bp proximal
Rr395209	regulatory region 395209	within coordinates