rs29040890 SNP Detail

Summary

• ID
  rs29040890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72368679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTGTG TTTGAAGACA
  GTTACAGTGT ACTTATATAT AATAAATGAG TAAATTTTTT TAAAAAGTTA AACAAAAAGA
  TTAACCGTCC CAAGCAACAT CAGGGTGACT GAACACCAGT GAGAAACTGC TGATAAGTGG
  GACACCAGTG GGTTGCACAA TGGGACCACA GACTCCCAAG TTCTCATGCA GTGGCCAAAT
  W
  ACACATTTTC TCTGTTTTTC TAAAATGAAA GAAAGCTCTT GTGGTTTTAC TGCCTCCTTA
  GTATTGTCAT AGTTTGAGAG ATCTCTGAGG TCCAAATTAA CTGAAGCTGC TGTTCCTCCT
  ACAGGCTTGC CCTTCTCCTC AGCTTCTTTC AGCCTTCTCT AATTCAACAA CAGGGGTCAG
  CTGCTTCTGT CCATTGGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38365403	NES09813969	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29040890					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38365403	NES09813969	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72368679 () rs orientation: forward

Symbol	Name	Function Class
Gm32150	predicted gene, 32150	within coordinates