rs29042275 SNP Detail

Summary

• ID
  rs29042275
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70410192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTAACC ACTATGCTTT
  GGCTGGTAAT TCAAGGATGT AAAGGTGTTA GTGATGTGGG CAGTAAGGAA GGAAGTCAGA
  CATTTGAATT GAGGAAAGAA TGAAGTTAGC TACAACATGG ACTGGAGAGA GCACTTTGTC
  CAAGAGATCA GAACTTTTTG CCTTGTAGGG AAATGATAAG AAAGATGGCC TGGTGCCTGT
  S
  AGAATGAGCA GACTACCTTC CTATGAACTT GAGCTTTCAT CCCATCTCAG GATGTGAATG
  GTTCTCTTAA CTTTCATCAG AATCATCTCA CACCAGTCAA GTGAAAATTC AGGTTCTTGG
  GGACCACGAT AAGTCTAGTC TGTTGAAAAC TTAAACCAGG AAGTCTTAGA CATCCATCTG
  GGGCTTCAGT TCATGGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38368874	NES09691264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29042275					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38368874	NES09691264	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70410192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22755	CpG island 22755	1279 bp distal
Mtmr1	myotubularin related protein 1	within coordinates
Rr691756	regulatory region 691756	1816 bp distal
Rr691757	regulatory region 691757	1796 bp distal
Rr691758	regulatory region 691758	1735 bp distal
Rr691759	regulatory region 691759	500 bp proximal
Tssr161163	transcription start site region 161163	1792 bp downstream
Tssr161164	transcription start site region 161164	1666 bp downstream