rs29043336 SNP Detail

Summary

• ID
  rs29043336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69390373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGAAAA GAAGGGATGG
  GGCACCGAGG AGGAACTGGC AGTCCTGCAA GTCCAGCGAG CGTGGGGAAG AGAGATACAA
  GTTCTACGAG GTCCTCGGTG TGCCTGCCTG AAACAGGAAA CAGCACGGTT GCATGTAGTA
  CACTGCAGAC ACCAGCGAAA GCAGAAGCCT GTCTGAGCAC CACCTCTCCC CCATCTCTTC
  Y
  TCATACACAA CATCCATTTG TTTGTAAAAG CAGCTTGGAA GTGCTACTTG AGGACGCCAC
  TCTTCACTAT GACACCCAAT GGACTAGCAG GAGGGAAAGT TACAGTCTCT GGCCAGCTAG
  AAGCATTTTT AAACTACTTA AAGTTTAGAG CTAGATACTT GATTCAGACA CATTTAATCA
  ATTAAAGCTC TACCCGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38371708	NES09690105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29043336					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38371708	NES09690105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69390373 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	Intron
Tssr163516	transcription start site region 163516	1847 bp upstream
Tssr163517	transcription start site region 163517	1779 bp upstream
Tssr163518	transcription start site region 163518	1482 bp upstream
Tssr163519	transcription start site region 163519	583 bp upstream