rs29043341 SNP Detail

Summary

• ID
  rs29043341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69388875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACAATGTTA GAGGAAGGAC TTCTGTCTGG TGACAGTAAT GAAATAACCT
  W
  ATCCTTACTA CATGCCCATA TTCTAGTTAC CTTCGTACTT AGGGAACACA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38371713	NES09690098	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29043341					SNP	A	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38371713	NES09690098	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69388875 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	mRNA-UTR
Tssr163512	transcription start site region 163512	984 bp upstream
Tssr163513	transcription start site region 163513	958 bp upstream
Tssr163514	transcription start site region 163514	892 bp upstream
Tssr163515	transcription start site region 163515	621 bp upstream
Tssr163516	transcription start site region 163516	349 bp upstream
Tssr163517	transcription start site region 163517	281 bp upstream
Tssr163518	transcription start site region 163518	within coordinates
Tssr163519	transcription start site region 163519	885 bp downstream