rs29043342 SNP Detail

Summary

• ID
  rs29043342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69388849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTGACTCCTG GTAATTGAAC AGTTTTCACA ATGTTAGAGG AAGGACTTCT
  S
  TCTGGTGACA GTAATGAAAT AACCTAATCC TTACTACATG CCCATATTCT           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38371714	NES09690097	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29043342					SNP	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38371714	NES09690097	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69388849 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	mRNA-UTR
Tssr163512	transcription start site region 163512	958 bp upstream
Tssr163513	transcription start site region 163513	932 bp upstream
Tssr163514	transcription start site region 163514	866 bp upstream
Tssr163515	transcription start site region 163515	595 bp upstream
Tssr163516	transcription start site region 163516	323 bp upstream
Tssr163517	transcription start site region 163517	255 bp upstream
Tssr163518	transcription start site region 163518	9 bp downstream
Tssr163519	transcription start site region 163519	911 bp downstream