rs29043343 SNP Detail

Summary

• ID
  rs29043343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69388838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA CAGTTTTCAC AATGTTAGAG
  R
  AAGGACTTCT GTCTGGTGAC AGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38371715	NES09690096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29043343					SNP	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38371715	NES09690096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69388838 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	mRNA-UTR
Tssr163512	transcription start site region 163512	947 bp upstream
Tssr163513	transcription start site region 163513	921 bp upstream
Tssr163514	transcription start site region 163514	855 bp upstream
Tssr163515	transcription start site region 163515	584 bp upstream
Tssr163516	transcription start site region 163516	312 bp upstream
Tssr163517	transcription start site region 163517	244 bp upstream
Tssr163518	transcription start site region 163518	20 bp downstream
Tssr163519	transcription start site region 163519	922 bp downstream