rs29045706 SNP Detail

Summary

• ID
  rs29045706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68460199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTTCA ACATGCAACA
  TAAATGTTAT AATAAGAATT TTATTTTTTT GGTAATAATT CTTTTAAAAC TAGTATATTT
  ATAATTCATC TAGTTCAAAT GTTAATGCTT GAAAATCTTT GGCAATATAG AACATAGAAT
  GGTCTTTGGC TATCTCTGAA AAGGGTAGGA AAAATGTGAA CTCTGTGAAT GTGTAAACAG
  R
  TACTCAGACA AAATACTTAT TTCCCTTGGA TTCTTTCTAG CTGCACTGAA CATGCAGTCA
  CAGTGGAAGG CAGATTCTTC CTGGTTGTCT GAAGACAGGA ACTACAAACT GGCCCTCATT
  CTTTCATTCC AAGCTGTTAT TTGTCTGCCC TCTTCGACCT TATAACATCA TGCCTGAAAT
  ATGCATTACT ATGACTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38373448	NES09696578	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29045706					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38373448	NES09696578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68460199 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr9940	regulatory region 9940	800 bp distal
Tssr161151	transcription start site region 161151	1254 bp downstream