rs29045709 SNP Detail

Summary

• ID
  rs29045709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68459371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCAATG TTCTTAGGCC
  ACTTGCTATG TTTTGTGGCG TGCTCACTTT ATTGTTCTGT TTTTCAGTTG AATAATTTAG
  TTTGGTATTA CTAAGTGAAT CTTAGCTTCA GAATACATAT ATATGCCTTT GTGTAAAAGA
  AAAACTCCAG TCTGGGAAAA TGAAAAGAGA AGCTTCATGG CGTCTGAATT TTCTGTATCA
  Y
  GGGTTCTTTA CAACAACCTT CTTGTCTATG TAAGTAGATA TTGGACCATA TTTTACTTGC
  TGATTCTGTT ATGACAACTA TACCTAAGTC AGTCAAGGTT TTAGCTTCAC TTGGATTCTT
  TGTTACTGTG GAGAGAAAAA ACAAACAAAC AAAAAAGAAA GCCACAGGAA AAAAATAAGA
  TCCCAATAAT TCTGGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38373451	NES09696610	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29045709					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38373451	NES09696610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68459371 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr6038	regulatory region 6038	1771 bp distal
Rr9940	regulatory region 9940	within coordinates
Tssr161151	transcription start site region 161151	426 bp downstream