rs29046286 SNP Detail

Summary

• ID
  rs29046286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68458517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTTTCTG GAATCCCTCT
  TGTTATAAAT TACTGACAAG ACATCAATTC TTTCCATATT AGAAAAACCA AAGACAAAAA
  TTTTCTTCTA TGTTCTGGCA CACACTTATT ATGTGTATGT TTGATAATGA AAAATTAGCA
  TCTTGTTAAT TAGTTTTAGG CACAAAACCT CTTTTCCTAT ACTGTAAACT CTCTTTTGGA
  Y
  TTTTAAAACA ATGGAGGTCA GACAACAGTA GAGGTGCTCC CTGCCTGTAA TTTTTGGAAT
  TGTGACATCC GAGTTCTGTT TTAGAGACTC ACTACTTCAT TTCTGCAATA CCTCTGTGTA
  ATAAAGGGTT AAGTTAGCAC AAAAGTGCTA ATCTTCCTTA GGCTTCAGGG AGGCAACCTC
  TAGACCCTTG GAATATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38373458	NES09696622	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29046286					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38373458	NES09696622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68458517 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr6038	regulatory region 6038	917 bp distal
Rr9940	regulatory region 9940	within coordinates
Tssr161151	transcription start site region 161151	401 bp upstream