rs29046287 SNP Detail

Summary

• ID
  rs29046287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68458507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCATTG GGGGTTTCTG
  GAATCCCTCT TGTTATAAAT TACTGACAAG ACATCAATTC TTTCCATATT AGAAAAACCA
  AAGACAAAAA TTTTCTTCTA TGTTCTGGCA CACACTTATT ATGTGTATGT TTGATAATGA
  AAAATTAGCA TCTTGTTAAT TAGTTTTAGG CACAAAACCT CTTTTCCTAT ACTGTAAACT
  Y
  TCTTTTGGAC TTTTAAAACA ATGGAGGTCA GACAACAGTA GAGGTGCTCC CTGCCTGTAA
  TTTTTGGAAT TGTGACATCC GAGTTCTGTT TTAGAGACTC ACTACTTCAT TTCTGCAATA
  CCTCTGTGTA ATAAAGGGTT AAGTTAGCAC AAAAGTGCTA ATCTTCCTTA GGCTTCAGGG
  AGGCAACCTC TAGACCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38373459	NES09696620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29046287					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38373459	NES09696620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68458507 () rs orientation: forward

Symbol	Name	Function Class
Aff2	AF4/FMR2 family, member 2	within coordinates
Tssr161151	transcription start site region 161151	411 bp upstream