rs29046292 SNP Detail

Summary

• ID
  rs29046292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:68456464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTTAAA TGTTAGAGTG
  AGAACAAATG GCATGTTAAC CTAGGAGAGT TTGTGTGGAT TTTGTGAAAA GAATCCAATC
  CTGGAATCAA GACCTTTGTG ATATAGATTT GCAGATGATA AATGTTAAAT GCCTAAGACT
  CCTTGTGGAG GAAGGGAATA AATTTTCACA TATTTTATAC AGCTTATGTC ACAAAGAGAG
  R
  CCGAAACAGA AAACCATTCA AACATTAAAC ATTAAGGGAA GAATGACATC AGGTTTGGTA
  CTCTGTGATT ATATTTTTCT TCTTTTTTTA CCCTATTGGA AATCTTAATT TTTCTTATAC
  TATCCTTTGT TATTTTTATG TATTCTTATA ATAAATAAAA TAATAGCATG AATGATATTA
  TGTGAACTAA AAATAGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38373464	NES09696700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29046292					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38373464	NES09696700	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:68456464 () rs orientation: forward

Symbol	Name	Function Class
2610007B07Rik	RIKEN cDNA 2610007B07 gene	1668 bp downstream
Aff2	AF4/FMR2 family, member 2	within coordinates
Rr6038	regulatory region 6038	337 bp proximal
Rr9940	regulatory region 9940	1938 bp proximal