rs29051747 SNP Detail

Summary

• ID
  rs29051747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65070097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGAAG GCAAGAAATT
  TTGCTTCAGC CTCCTAGGCA CATTGGATTC CCAATGAGAT ACTGCTAACT GGAGATGGAT
  GGATGAAGAC ATGGACTGTG GTAGGAAAGG CTTCCTTGGA GGTTAGGTCT CAGGTTAGAA
  GATGATGACT GTGGGGTGGG GGAGGCCATG TGTGGCATAA TGTTGGTGTG AGGTTCAAGG
  K
  TCAGGAGCCT TTCTTGAGCA CTGAGCAATG ATGGTGAAAC CAGATGAGAA AAGCTGGAAG
  AAGACTCCAT GGGAAGACCA GCAGGCTCAA CTAACTGGAA CCTTGAGATC TTTCAGATAC
  TGATCCACCA ACCAGACAGC ATACACTAGC TTGTCCGAGG CCCCAACACA CATATAGCAG
  AGGACTGCCT GGTCTGGACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38377191	NES09710618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29051747					SNP	T	T	T	T	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38377191	NES09710618	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65070097 () rs orientation: forward

Symbol	Name	Function Class
H2al1r-ps	H2A histone family member L1R, pseudogene	601 bp downstream
Tssr161126	transcription start site region 161126	995 bp downstream