rs29051749 SNP Detail

Summary

• ID
  rs29051749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65069725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACCACAC CTTCAGCCTC
  ATCCAGCACC TGTGTCCTAC TAGCTGGGGG AGCTAATCAA ACATGCTATT AAAGCACCTA
  AATCGAACCC ATTGATCCTG GCTCCTTTTG TTTTTTATTT TTGTTTGTTT GTTTGTTTTC
  ATTTTGAGCT AGACGTTGCT ATGAACCACT CGGGAGGGTG ATGGTAGGTT TGAAGCTGTC
  K
  TTAATGTGGG GAACTTGATT TCCAGAGGAA ATTTCTAATA GGGACCACAT GGGCAGTGGT
  CTTGTTGGGA GGAGGTGGTG ATGTGTAAGC ACTTTTGACC CGGTGACAAT GGGAGGATTT
  GGCTAAGGTA GAGGGCAGAG AAGCTGTCTT GGTGGTCTGT GAGCCCACAA GGCCTTGGAA
  GGCAAGAAAT TTTGCTTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38377193	NES09710615	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29051749					SNP	T	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38377193	NES09710615	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65069725 () rs orientation: forward

Symbol	Name	Function Class
Gm14671	predicted gene 14671	1814 bp downstream
Gm62074	predicted gene, 62074	1632 bp downstream
H2al1r-ps	H2A histone family member L1R, pseudogene	229 bp downstream
Tssr161126	transcription start site region 161126	623 bp downstream