rs29051752 SNP Detail

Summary

• ID
  rs29051752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65069157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTAAGG TGATCTGTTT
  CCTAATAAGG ACATTTCTGC CTGAACACCA GAGTTCAGTG GCTACCAGTG ATATCATAAA
  GTATGTTGTA ACAAAACCCT CTCAAGGATA ACTTCATAGG TGGGTGAGAA GGTTGGTTAT
  TTGGAGAGAC TTGGGCCAAC AGAGAGAACC AGCCAAACCA AACCACCACA CAAACATCAT
  R
  GCCAGGAAAA GACAAAGGTG AAGAAGACAG AACATAACCA GCTCCAAGAG AGCTGAGTTT
  CAATTTCCCG TTAGTCTTGT AGATTGTATC CTACTAGAGG GAAACTATTC TAGACACCTG
  AGCTTTTCTG CATCTGTATT CGTCTCAGGT GTGCTCGAGT ATGTAACTTC ATAGAACATC
  CTTGAACTGG CTGGTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38377196	NES09710612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29051752					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38377196	NES09710612	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65069157 () rs orientation: forward

Symbol	Name	Function Class
Gm14671	predicted gene 14671	1246 bp downstream
Gm62074	predicted gene, 62074	1064 bp downstream
H2al1r-ps	H2A histone family member L1R, pseudogene	within coordinates
Tssr161126	transcription start site region 161126	55 bp downstream