rs29052095 SNP Detail

Summary

• ID
  rs29052095
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65067967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTACAACTG TTTATAACTG TTTTGGAGCA GAATATCACT
  ACTGGAAGAT ATATGTATGC ATGCTTTTTT GTTAAAAAAA TTCTGCTTAC ATTTAGGGTT
  M
  AACTAAGAAG CAAAACAGTT TTTATTCAGG TGAAATCAGT TTATATGTTC ATTTGTTCTG
  AGTCTGTATT CCATTTGCTA ACCTAAAATC CCAGTGAATT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38377199	NES09710641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29052095					SNP	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38377199	NES09710641	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65067967 () rs orientation: forward

Symbol	Name	Function Class
Gm14671	predicted gene 14671	56 bp downstream
Gm62074	predicted gene, 62074	within coordinates
H2al1r-ps	H2A histone family member L1R, pseudogene	1188 bp upstream
Tssr161126	transcription start site region 161126	1124 bp upstream