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rs29054927 SNP Detail
Summary
  • ID
    rs29054927
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:60172576 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATAATAAACA AATATACTCT
    ATAACATATA GTTACCCTTC TAGCCCCAAA CATATAGCCT ATCTACAATT TGTCTTGGCA
    CACAAAGCAG ACATATATCA CAATGTATAG ACTAGCTCCA CAATACATAG ATGTAGAAAT
    ATGATAACCA GACATAGCCT ATGACAGAAA AACATTCTGA TAAACAAAAT TGAATTCACA
    Y
    GTACAGAGTT TCCTCAAAAT AAATGTAATT ACTCTGTAAT ATAAATGCTT TATAAGGAGA
    AGGTATGTTT ATCCACACAG AACTGCTGTA GGCCTCAGAC TTGGCCCATA GAATAAATAC
    CTATGGCATG CTCTACAAAC GACTCACCAG TCATGCCCTT TACACACAGT CTTACCCTAC
    AAACACTCTT GCTTCATCTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38382439 NES09719126 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29054927 SNP C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38382439 NES09719126 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:60172576 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cdr1os cerebellar degeneration related antigen 1, opposite strand within coordinates
Gm53013 predicted gene, 53013 within coordinates
Tssr161073 transcription start site region 161073 1010 bp downstream
Tssr161074 transcription start site region 161074 991 bp downstream
Tssr161075 transcription start site region 161075 961 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory