rs29054931 SNP Detail

Summary

• ID
  rs29054931
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60170901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGCATT TATAAGATAC
  ATGTTGCAAC ATGGGGTGTG CTCCACAACG TAGACTTTAT ATGAGGATAA CACTTGGCCC
  AAGAAACAGA GAGACTTTGG ATACTTGGCA TTGAAATATA AGACAAAGAT CACCCTGACA
  ATGTCAGACT TTCTGTATAA CTTCCACAAT GGCCTTTAAT AACACACATG TCTTTAAAAC
  M
  ACTTACCATG GCCTAAGAAT ATACAGATAT ACCCATATGT CATAACACAT GGATACTCTT
  AGACTATATA TCCACTCTAT ATCACATGGA CTTTCCCTGC AAAATACACT CATAAACAGC
  AAGCCATGGG TCTATCACAC CAAATAAAAA GTCAACCCCT ACATGCTCTT ATCATATGCT
  TCCCAAAGTT TTACTGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38382443	NES09719122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29054931					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382443	NES09719122	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60170901 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr161073	transcription start site region 161073	656 bp upstream
Tssr161074	transcription start site region 161074	671 bp upstream
Tssr161075	transcription start site region 161075	705 bp upstream