rs29055071 SNP Detail

Summary

• ID
  rs29055071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60164740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTGA ACACAGACAT
  ACAACCTAGC TCAAATCCCT TGCCATGACA AGCAAACTCC TCCAAAACAC AATCTCTGCC
  ATCTGACAAA CATCATTTCA TTAGGACAGA GGCTTATTTT ATACTCTACA GTCCCACTGT
  GCACTTTTAG CCCATGCAAC ACAGATTAAG TTTATGAGTA CAGAAGACAC TACCAATGGC
  Y
  CTGAGCTCTG CTTACAGTAC CACATAGCAA TATAGAAGTA TAACCCGAAG CACATAGATC
  ATGCCTTGTT AAAGAGGATT TTAACTTAAT ACACACATGT ATCCTACAAC ACAAGTTCAT
  CTCATGATGA ACATACAGTG CAAACATACA GTACAAACAT TTGCCACATA GACAGTCATT
  TGCTCCACAA CTTTCAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38382465	NES09719279	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29055071					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382465	NES09719279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60164740 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Rr691612	regulatory region 691612	1271 bp distal
Tssr161069	transcription start site region 161069	824 bp downstream
Tssr161070	transcription start site region 161070	635 bp downstream
Tssr161071	transcription start site region 161071	611 bp downstream
Tssr161072	transcription start site region 161072	291 bp downstream