rs29055072 SNP Detail

Summary

• ID
  rs29055072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60164710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGCAT CACTCTATAA
  AATGCAGACT TCCTCCCTGA ACACAGACAT ACAACCTAGC TCAAATCCCT TGCCATGACA
  AGCAAACTCC TCCAAAACAC AATCTCTGCC ATCTGACAAA CATCATTTCA TTAGGACAGA
  GGCTTATTTT ATACTCTACA GTCCCACTGT GCACTTTTAG CCCATGCAAC ACAGATTAAG
  Y
  TTATGAGTAC AGAAGACACT ACCAATGGCT CTGAGCTCTG CTTACAGTAC CACATAGCAA
  TATAGAAGTA TAACCCGAAG CACATAGATC ATGCCTTGTT AAAGAGGATT TTAACTTAAT
  ACACACATGT ATCCTACAAC ACAAGTTCAT CTCATGATGA ACATACAGTG CAAACATACA
  GTACAAACAT TTGCCACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38382466	NES09719277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29055072					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382466	NES09719277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60164710 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Rr691612	regulatory region 691612	1241 bp distal
Tssr161069	transcription start site region 161069	794 bp downstream
Tssr161070	transcription start site region 161070	605 bp downstream
Tssr161071	transcription start site region 161071	581 bp downstream
Tssr161072	transcription start site region 161072	261 bp downstream