rs29055362 SNP Detail

Summary

• ID
  rs29055362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60228947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAAATCC AAGTCTTCCC AGAAGTCCGA GTCTTCCCAG
  AAATCCGAGT CTTCCCAGAA ATCCGAGTCT TCCCAGAAAT CCGAGTCTTC CCAGAAATCC
  R
  AGTCTTCCCA GAAATCCGAG TCTTCCCAGA AGTCCAAGTC TTCCCAGAAG TCCAAGTCTT
  CCCAGAAATC CGAGTCTTCC CAAAGATCCA CTTCTTCCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38382354	NES09718169	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29055362					SNP	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382354	NES09718169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60228947 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	within coordinates
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	1319 bp downstream
Tssr161081	transcription start site region 161081	1875 bp downstream
Tssr161082	transcription start site region 161082	1855 bp downstream
Tssr161083	transcription start site region 161083	1778 bp downstream
Tssr161084	transcription start site region 161084	1541 bp downstream
Tssr161085	transcription start site region 161085	1524 bp downstream
Tssr161086	transcription start site region 161086	1465 bp downstream
Tssr161087	transcription start site region 161087	1432 bp downstream
Tssr161088	transcription start site region 161088	1408 bp downstream
Tssr161089	transcription start site region 161089	1391 bp downstream
Tssr161090	transcription start site region 161090	67 bp upstream
Tssr161091	transcription start site region 161091	176 bp upstream
Tssr161092	transcription start site region 161092	290 bp upstream
Tssr161093	transcription start site region 161093	335 bp upstream
Tssr161094	transcription start site region 161094	359 bp upstream
Tssr161095	transcription start site region 161095	400 bp upstream
Tssr161096	transcription start site region 161096	439 bp upstream
Tssr161097	transcription start site region 161097	507 bp upstream
Tssr161098	transcription start site region 161098	537 bp upstream
Tssr161099	transcription start site region 161099	653 bp upstream
Tssr161100	transcription start site region 161100	696 bp upstream
Tssr161101	transcription start site region 161101	717 bp upstream
Tssr161102	transcription start site region 161102	789 bp upstream